☰ Navigation Tabs
Crystal structure of drug resistant SRC kinase domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 298 19% Ethylene glycol, pH 8, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.93 57.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42 α = 78.78 b = 63.02 β = 88.8 c = 73.95 γ = 90.14
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate Osmic 2006-11-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.5417
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.32 72.548 93.8 0.075 0.075 7.3 2.2 32189 30194 38.452
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.32 2.45 91.6 0.37 0.37 2.1 2.2 4326
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.32 72.548 32189 30188 1546 93.79 0.209 0.209 0.205 0.2064 0.28 0.2778 RANDOM 33.707
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.31 0.02 -0.4 -0.48 0.76 0.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.352 r_dihedral_angle_3_deg 19.045 r_dihedral_angle_4_deg 16.392 r_dihedral_angle_1_deg 7.797 r_scangle_it 3.215 r_scbond_it 2.139 r_angle_refined_deg 1.782 r_mcangle_it 1.524 r_mcbond_it 0.89 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.352 r_dihedral_angle_3_deg 19.045 r_dihedral_angle_4_deg 16.392 r_dihedral_angle_1_deg 7.797 r_scangle_it 3.215 r_scbond_it 2.139 r_angle_refined_deg 1.782 r_mcangle_it 1.524 r_mcbond_it 0.89 r_nbtor_refined 0.307 r_symmetry_hbond_refined 0.264 r_xyhbond_nbd_refined 0.258 r_symmetry_vdw_refined 0.238 r_nbd_refined 0.222 r_chiral_restr 0.117 r_bond_refined_d 0.016 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3991 Nucleic Acid Atoms Solvent Atoms 172 Heterogen Atoms 6
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction MAR345dtb data collection MOSFLM data reduction PHASER phasing