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Crystal Structure of Bacillus thuringiensis PlcR complexed with PapR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.3 291 40% PEG 200, 100 mM MES, pH 6.3, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.82 56.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.68 α = 90 b = 85.68 β = 90 c = 189.87 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 ondulator 2004-12-03 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD ADSC QUANTUM 315 ondulator 2004-12-04 M SINGLE WAVELENGTH 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.976 ESRF ID29 2 SYNCHROTRON ESRF BEAMLINE ID29 0.979 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.6 74.2 100 0.078 0.078 5.6 8.2 24242 71.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2.6 2.74 100 0.457 0.457 1.6 5.6 3508
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.6 74.12 24186 1234 99.95 0.228 0.224 0.2135 0.304 0.2918 RANDOM 40.599
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.19 -0.09 -0.19 0.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.282 r_dihedral_angle_3_deg 20.476 r_dihedral_angle_4_deg 17.295 r_dihedral_angle_1_deg 6.64 r_scangle_it 3.585 r_scbond_it 2.297 r_angle_refined_deg 1.69 r_mcangle_it 1.389 r_mcbond_it 0.829 r_nbtor_refined 0.326
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.282 r_dihedral_angle_3_deg 20.476 r_dihedral_angle_4_deg 17.295 r_dihedral_angle_1_deg 6.64 r_scangle_it 3.585 r_scbond_it 2.297 r_angle_refined_deg 1.69 r_mcangle_it 1.389 r_mcbond_it 0.829 r_nbtor_refined 0.326 r_symmetry_vdw_refined 0.266 r_symmetry_hbond_refined 0.256 r_nbd_refined 0.249 r_xyhbond_nbd_refined 0.159 r_chiral_restr 0.127 r_bond_refined_d 0.018 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4862 Nucleic Acid Atoms Solvent Atoms 30 Heterogen Atoms 28
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction ADSC data collection MOSFLM data reduction SHARP phasing