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High resolution structure of the major periplasmic domain from the cell shape-determining filament MreC (orthorhombic form)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 298 0.1M Na Acetate pH 4.6, 0.2M Ammonium sulfate, 12.5% PEG 4000, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.18 43.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.247 α = 90 b = 70.362 β = 90 c = 89.763 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2006-07-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 1.00000 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 55.385 99.7 0.057 0.057 8.3 3.8 99707
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.26 98.8 0.472 0.472 1.6 3.6 14257
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.2 55.385 99637 4983 99.6 0.145 0.145 0.144 0.167 0.1851 RANDOM 10.26
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.33 0.4 -0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.728 r_dihedral_angle_4_deg 19.184 r_dihedral_angle_1_deg 13.21 r_dihedral_angle_3_deg 12.784 r_sphericity_free 7.169 r_scangle_it 4.914 r_sphericity_bonded 3.973 r_scbond_it 3.662 r_angle_other_deg 3.131 r_mcangle_it 2.448
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.728 r_dihedral_angle_4_deg 19.184 r_dihedral_angle_1_deg 13.21 r_dihedral_angle_3_deg 12.784 r_sphericity_free 7.169 r_scangle_it 4.914 r_sphericity_bonded 3.973 r_scbond_it 3.662 r_angle_other_deg 3.131 r_mcangle_it 2.448 r_mcbond_it 2.024 r_rigid_bond_restr 1.837 r_angle_refined_deg 1.674 r_mcbond_other 0.698 r_symmetry_vdw_other 0.312 r_symmetry_hbond_refined 0.304 r_symmetry_vdw_refined 0.272 r_nbd_refined 0.224 r_nbd_other 0.196 r_xyhbond_nbd_refined 0.196 r_nbtor_refined 0.165 r_chiral_restr 0.139 r_nbtor_other 0.096 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2498 Nucleic Acid Atoms Solvent Atoms 439 Heterogen Atoms 17
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction ADSC data collection MOSFLM data reduction SOLVE phasing