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CRYSTAL STRUCTURE OF A PUTATIVE METHYLTRANSFERASE (TFU_2867) FROM THERMOBIFIDA FUSCA YX AT 1.95 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 277 NANODROP, 70.0% MPD, 0.1M HEPES pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.6 52.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 102.627 α = 90 b = 76.024 β = 90 c = 81.315 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2007-06-04 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837, 0.97917, 0.97894 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 29.386 99.8 0.081 0.081 7.2 3.6 47006 23.63
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2 99.4 0.575 0.575 1.3 3.5 3396
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.95 29.386 46969 2375 99.8 0.173 0.171 0.1791 0.213 0.222 RANDOM 31.045
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.9 3.12 -1.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.633 r_dihedral_angle_4_deg 16.646 r_dihedral_angle_3_deg 12.625 r_scangle_it 6.827 r_dihedral_angle_1_deg 5.964 r_scbond_it 5.645 r_mcangle_it 2.784 r_mcbond_it 2.116 r_angle_refined_deg 1.707 r_angle_other_deg 0.988
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.633 r_dihedral_angle_4_deg 16.646 r_dihedral_angle_3_deg 12.625 r_scangle_it 6.827 r_dihedral_angle_1_deg 5.964 r_scbond_it 5.645 r_mcangle_it 2.784 r_mcbond_it 2.116 r_angle_refined_deg 1.707 r_angle_other_deg 0.988 r_mcbond_other 0.544 r_symmetry_vdw_other 0.339 r_nbd_refined 0.208 r_nbd_other 0.203 r_nbtor_refined 0.179 r_xyhbond_nbd_refined 0.149 r_symmetry_vdw_refined 0.115 r_symmetry_hbond_refined 0.11 r_chiral_restr 0.088 r_nbtor_other 0.086 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4088 Nucleic Acid Atoms Solvent Atoms 272 Heterogen Atoms 142
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MAR345 data collection MOSFLM data reduction SHELXD phasing autoSHARP phasing