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Structure of Cu(I) form of the M51A mutant of amicyanin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1AAC pdb code 1AAC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 5.5 293 2.5-3.0 M phosphate
10 mg/ml amicyanin, pH 5.5, EVAPORATION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.84 33.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 28.21 α = 90 b = 55.36 β = 95.75 c = 27.27 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2005-08-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-C 0.90000 APS 14-BM-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 0.92 30 92.2 0.081 12 7.1 53675 52498
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 0.92 0.94 45.3 0.259 4.8 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION AB INITIO FREE R pdb code 1AAC 0.92 30 52498 52498 2622 0.122 0.122 0.1206 0.1525 0.1469 0.1558 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 7 785 954.25
RMS Deviations Key Refinement Restraint Deviation s_non_zero_chiral_vol 0.11 s_zero_chiral_vol 0.106 s_approx_iso_adps 0.092 s_anti_bump_dis_restr 0.059 s_similar_adp_cmpnt 0.05 s_angle_d 0.039 s_from_restr_planes 0.0316 s_bond_d 0.018 s_rigid_bond_adp_cmpnt 0.006 s_similar_dist
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 825 Nucleic Acid Atoms Solvent Atoms 139 Heterogen Atoms 12
Software Software Software Name Purpose SHELX refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling SHELX phasing SHELXL-97 refinement