☰ Navigation Tabs
Crystal structure of a putative dioxygenase (npun_f5605) from nostoc punctiforme pcc 73102 at 2.60 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.33 293 NANODROP, 21.4% Ethanol, 0.2M Magnesium chloride, 0.1M HEPES pH 7.33, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.71 54.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 102.096 α = 90 b = 102.096 β = 90 c = 250.807 γ = 120
Symmetry Space Group P 62 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2007-04-07 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837, 0.97916, 0.97883 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 47.298 99.6 0.127 10.68 24629 -3 70.689
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.69 98.8 0.012 1.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.6 47.298 24591 1252 99.66 0.242 0.24 0.2411 0.286 0.2855 RANDOM 60.231
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.89 1.44 2.89 -4.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 23.062 r_dihedral_angle_4_deg 9.89 r_dihedral_angle_3_deg 9.803 r_scangle_it 3.683 r_scbond_it 2.641 r_dihedral_angle_1_deg 2.078 r_angle_refined_deg 1.824 r_mcangle_it 1.443 r_angle_other_deg 1.235 r_mcbond_it 1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 23.062 r_dihedral_angle_4_deg 9.89 r_dihedral_angle_3_deg 9.803 r_scangle_it 3.683 r_scbond_it 2.641 r_dihedral_angle_1_deg 2.078 r_angle_refined_deg 1.824 r_mcangle_it 1.443 r_angle_other_deg 1.235 r_mcbond_it 1 r_mcbond_other 0.264 r_xyhbond_nbd_refined 0.23 r_nbtor_refined 0.172 r_nbd_refined 0.153 r_symmetry_vdw_other 0.132 r_nbd_other 0.128 r_symmetry_hbond_refined 0.12 r_symmetry_vdw_refined 0.111 r_nbtor_other 0.08 r_chiral_restr 0.07 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_bond_other_d 0.003 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4500 Nucleic Acid Atoms Solvent Atoms 33 Heterogen Atoms 58
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction MAR345 data collection XDS data reduction autoSHARP phasing