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Crystal structure of mitoNEET
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 100 mM Tris-HCl, 18% PEG 3350 , 200 mM KI., pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K 2 VAPOR DIFFUSION, HANGING DROP 7.4 293 100 mM Tris-HCl, 30% PEG 2000 ,100 mM NaCl, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.838 α = 90 b = 59.139 β = 90 c = 65.971 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV mirrors 2006-05-19 M SINGLE WAVELENGTH 2 2 x-ray 100 CCD ADSC QUANTUM 315 2006-07-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.5418 2 SYNCHROTRON SPRING-8 BEAMLINE BL41XU 1.0 SPring-8 BL41XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.8 50 95.2 0.045 15.2 6.4 15523 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.8 1.83 76.8 0.216 5.4 616
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.81 21.92 14902 739 91.62 0.166 0.164 0.1669 0.193 0.1972 RANDOM 49.944
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 5.12 -3.93 -1.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 24.065 r_dihedral_angle_3_deg 14.192 r_dihedral_angle_4_deg 6.664 r_dihedral_angle_1_deg 5.679 r_scangle_it 2.877 r_scbond_it 1.939 r_angle_refined_deg 1.888 r_mcangle_it 1.214 r_mcbond_it 0.803 r_nbtor_refined 0.311
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 24.065 r_dihedral_angle_3_deg 14.192 r_dihedral_angle_4_deg 6.664 r_dihedral_angle_1_deg 5.679 r_scangle_it 2.877 r_scbond_it 1.939 r_angle_refined_deg 1.888 r_mcangle_it 1.214 r_mcbond_it 0.803 r_nbtor_refined 0.311 r_symmetry_vdw_refined 0.227 r_nbd_refined 0.192 r_xyhbond_nbd_refined 0.144 r_symmetry_hbond_refined 0.135 r_chiral_restr 0.106 r_bond_refined_d 0.015 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1074 Nucleic Acid Atoms Solvent Atoms 95 Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement SCALEPACK data scaling CNS phasing CNS refinement DENZO data reduction PDB_EXTRACT data extraction HKL-2000 data collection