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Crystal structure of flavin reductase domain protein (YP_831077.1) from Arthrobacter sp. FB24 at 1.90 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9.5 277 NANODROP, 40.0% PEG 600, 0.1M CHES pH 9.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.58 52.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.51 α = 90 b = 60.51 β = 90 c = 180.7 γ = 120
Symmetry Space Group P 62 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, toroid focusing mirror 2007-06-03 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.91162, 0.97908 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 29.841 99.8 0.089 0.089 13.86 13.73 16301 -3 32.44
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 99.6 1.032 1.032 1.97
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.9 29.841 16257 817 99.83 0.206 0.204 0.2035 0.251 0.2499 RANDOM 30.896
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.1 0.55 1.1 -1.65
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.944 r_dihedral_angle_4_deg 16.726 r_dihedral_angle_3_deg 13.792 r_scangle_it 7.714 r_dihedral_angle_1_deg 6.443 r_scbond_it 5.851 r_mcangle_it 3.153 r_mcbond_it 2.44 r_angle_refined_deg 1.647 r_angle_other_deg 0.981
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.944 r_dihedral_angle_4_deg 16.726 r_dihedral_angle_3_deg 13.792 r_scangle_it 7.714 r_dihedral_angle_1_deg 6.443 r_scbond_it 5.851 r_mcangle_it 3.153 r_mcbond_it 2.44 r_angle_refined_deg 1.647 r_angle_other_deg 0.981 r_mcbond_other 0.661 r_symmetry_vdw_other 0.307 r_symmetry_vdw_refined 0.256 r_nbd_other 0.208 r_nbd_refined 0.207 r_nbtor_refined 0.19 r_xyhbond_nbd_refined 0.156 r_symmetry_hbond_refined 0.147 r_chiral_restr 0.105 r_nbtor_other 0.092 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1226 Nucleic Acid Atoms Solvent Atoms 63 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SOLVE phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction MAR345 data collection XDS data reduction