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The crystal structure of PDZ-Fibronectin fusion protein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 293 1M (NH4)2HPO4, 0.1M Tris-HCl, pH 9, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.98 58.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.818 α = 90 b = 79.35 β = 90 c = 119.842 γ = 90
Symmetry Space Group I 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2007-06-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 0.9793 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 94.3 0.112 18.76 4.3 23897
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.86 97 0.423 5.78 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 20 22043 1163 94.2 0.16971 0.16787 0.1799 0.2047 0.2116 RANDOM 18.336
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.07 2.43 -1.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.378 r_dihedral_angle_4_deg 20.188 r_dihedral_angle_3_deg 12.186 r_dihedral_angle_1_deg 7.418 r_scangle_it 4.376 r_scbond_it 3.495 r_mcbond_it 2.158 r_mcangle_it 1.962 r_angle_refined_deg 1.46 r_angle_other_deg 0.803
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.378 r_dihedral_angle_4_deg 20.188 r_dihedral_angle_3_deg 12.186 r_dihedral_angle_1_deg 7.418 r_scangle_it 4.376 r_scbond_it 3.495 r_mcbond_it 2.158 r_mcangle_it 1.962 r_angle_refined_deg 1.46 r_angle_other_deg 0.803 r_mcbond_other 0.251 r_symmetry_vdw_other 0.231 r_nbd_other 0.206 r_nbd_refined 0.192 r_nbtor_refined 0.183 r_symmetry_hbond_refined 0.165 r_xyhbond_nbd_refined 0.142 r_symmetry_vdw_refined 0.119 r_chiral_restr 0.092 r_nbtor_other 0.087 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d 0.005 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1527 Nucleic Acid Atoms Solvent Atoms 214 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing