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Saccharomyces cerevisiae cytosolic exopolyphosphatase, sulfate complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 291 7% PEG 4000, 150 mM (NH4)2SO4, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.18 43.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.66 α = 90 b = 82.914 β = 90 c = 119.228 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.93400 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 41.4 88.2 0.053 8.5 4.3 64994 64994
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.89 51.4 0.194 3.7 2.7 5374
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 1.8 41.4 61666 3275 88.01 0.15944 0.15722 0.20099 RANDOM 23.4
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.21 0.66 -0.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.135 r_dihedral_angle_3_deg 14.571 r_dihedral_angle_4_deg 14.396 r_dihedral_angle_1_deg 5.901 r_scangle_it 3.534 r_scbond_it 2.519 r_angle_refined_deg 1.467 r_mcangle_it 1.365 r_mcbond_it 1.22 r_angle_other_deg 0.839
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.135 r_dihedral_angle_3_deg 14.571 r_dihedral_angle_4_deg 14.396 r_dihedral_angle_1_deg 5.901 r_scangle_it 3.534 r_scbond_it 2.519 r_angle_refined_deg 1.467 r_mcangle_it 1.365 r_mcbond_it 1.22 r_angle_other_deg 0.839 r_symmetry_vdw_other 0.262 r_mcbond_other 0.246 r_nbd_refined 0.217 r_symmetry_vdw_refined 0.204 r_symmetry_hbond_refined 0.194 r_nbd_other 0.181 r_nbtor_refined 0.178 r_xyhbond_nbd_refined 0.168 r_chiral_restr 0.097 r_nbtor_other 0.086 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6240 Nucleic Acid Atoms Solvent Atoms 788 Heterogen Atoms 39
Software Software Software Name Purpose REFMAC refinement ADSC data collection MOSFLM data reduction SCALA data scaling SOLVE phasing