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Crystal structure of human septin trimer 2/6/7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 298 1.4M Ammonium Sulfate, 0.1M MES, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 8.95 86.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 252.515 α = 90 b = 252.515 β = 90 c = 156.485 γ = 90
Symmetry Space Group P 43 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2006-09-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.07188 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 4 50 0.229 11.42 16.2 42485
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 4 4.1 98.9 0.379 3.98
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIRAS THROUGHOUT 4 49.15 40358 2125 98.27 0.37637 0.37554 0.3985 0.39208 0.4011 RANDOM 78.174
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -14.93 -14.93 29.85
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 51.524 r_dihedral_angle_3_deg 30.803 r_dihedral_angle_1_deg 18.875 r_dihedral_angle_4_deg 5.216 r_scangle_it 5.123 r_angle_refined_deg 4.719 r_scbond_it 3.276 r_mcangle_it 2.844 r_mcbond_it 1.747 r_nbd_refined 0.475
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 51.524 r_dihedral_angle_3_deg 30.803 r_dihedral_angle_1_deg 18.875 r_dihedral_angle_4_deg 5.216 r_scangle_it 5.123 r_angle_refined_deg 4.719 r_scbond_it 3.276 r_mcangle_it 2.844 r_mcbond_it 1.747 r_nbd_refined 0.475 r_xyhbond_nbd_refined 0.403 r_nbtor_refined 0.375 r_symmetry_vdw_refined 0.339 r_chiral_restr 0.247 r_bond_refined_d 0.057 r_gen_planes_refined 0.014 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4407 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 88
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction SOLVE phasing