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Crystal Structure of Estrogen Receptor Alpha mutant 537S Complexed with 4-(6-hydroxy-1H-indazol-3-yl)benzene-1,3-diol
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 298 pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.07 40.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.014 α = 90 b = 82.942 β = 109.25 c = 58.577 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.97946 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 20 92.5 0.105 0.105 12.9 6.2 14355 14355 67.702
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.69 67.5 0.535 0.535 2.35 3.1 1044
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.6 15 14267 14267 694 91.71 0.198 0.195 0.197 0.249 0.2536 RANDOM 34.666
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.48 0.16 7.08 -3.49
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.17 r_dihedral_angle_4_deg 23.125 r_dihedral_angle_3_deg 18.596 r_dihedral_angle_1_deg 6.399 r_scangle_it 2.843 r_scbond_it 1.833 r_angle_refined_deg 1.559 r_mcangle_it 1.261 r_angle_other_deg 0.971 r_mcbond_it 0.789
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.17 r_dihedral_angle_4_deg 23.125 r_dihedral_angle_3_deg 18.596 r_dihedral_angle_1_deg 6.399 r_scangle_it 2.843 r_scbond_it 1.833 r_angle_refined_deg 1.559 r_mcangle_it 1.261 r_angle_other_deg 0.971 r_mcbond_it 0.789 r_symmetry_vdw_other 0.288 r_nbd_refined 0.233 r_symmetry_vdw_refined 0.227 r_nbd_other 0.201 r_nbtor_refined 0.189 r_xyhbond_nbd_refined 0.17 r_mcbond_other 0.136 r_symmetry_hbond_refined 0.105 r_nbtor_other 0.096 r_chiral_restr 0.079 r_bond_refined_d 0.016 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3985 Nucleic Acid Atoms Solvent Atoms 41 Heterogen Atoms 36
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction PHASER phasing