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CRYSTAL STRUCTURE OF a DUF416 family protein (SBAL_3149) FROM SHEWANELLA BALTICA OS155 AT 1.91 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 277 NANODROP, 2.4M (NH4)2SO4, 0.1M MES pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.57 52.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.57 α = 90 b = 77.14 β = 90 c = 87.17 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, toroid focusing mirror 2007-06-03 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.91837, 0.97922, 0.97905 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.91 29.062 99.2 0.041 13.64 18196 -3 42.205
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.91 1.98 97.2 0.633 1.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.91 29.062 18169 923 99.57 0.171 0.169 0.215 0.2165 RANDOM 37.634
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.06 1.07 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.01 r_dihedral_angle_4_deg 19.123 r_dihedral_angle_3_deg 13.335 r_scangle_it 8.186 r_scbond_it 5.987 r_dihedral_angle_1_deg 4.73 r_mcangle_it 3.325 r_mcbond_it 2.169 r_angle_refined_deg 1.456 r_angle_other_deg 0.976
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.01 r_dihedral_angle_4_deg 19.123 r_dihedral_angle_3_deg 13.335 r_scangle_it 8.186 r_scbond_it 5.987 r_dihedral_angle_1_deg 4.73 r_mcangle_it 3.325 r_mcbond_it 2.169 r_angle_refined_deg 1.456 r_angle_other_deg 0.976 r_mcbond_other 0.547 r_nbd_refined 0.221 r_symmetry_vdw_refined 0.218 r_symmetry_vdw_other 0.187 r_nbtor_refined 0.183 r_nbd_other 0.174 r_symmetry_hbond_refined 0.17 r_xyhbond_nbd_refined 0.163 r_nbtor_other 0.089 r_chiral_restr 0.085 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1503 Nucleic Acid Atoms Solvent Atoms 124 Heterogen Atoms 59
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction MAR345 data collection XDS data reduction SHELXD phasing autoSHARP phasing