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CRYSTAL STRUCTURE OF MRE11 FROM THERMOTOGA MARITIMA MSB8 (TM1635) AT 2.20 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.57 277 NANODROP, 10.3% PEG 6000, 0.1M MES pH 5.57, VAPOR DIFFUSION, SITTING DROP, temperature 277K 2 VAPOR DIFFUSION, SITTING DROP 5.14 277 NANODROP, 2.5% PEG 6000, 0.1M MES pH 5.14, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.598 α = 90 b = 113.414 β = 101.77 c = 80.951 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2007-05-13 M MAD 2 2
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.98086 SSRL BL11-1 2 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837, 0.97917, 0.97891 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 37.45 98.8 0.043 0.043 11.3 2.6 56132 43.03
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.26 99.5 0.533 0.533 0.9 2.5 3132
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.2 37.45 42148 2120 98.71 0.2 0.198 0.1996 0.241 0.2394 RANDOM 41.949
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.12 0.5 2.73 -0.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.069 r_dihedral_angle_4_deg 19.627 r_dihedral_angle_3_deg 15.898 r_scangle_it 10.128 r_scbond_it 8.361 r_dihedral_angle_1_deg 6.673 r_mcangle_it 5.283 r_mcbond_it 4.038 r_mcbond_other 1.477 r_angle_refined_deg 1.428
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.069 r_dihedral_angle_4_deg 19.627 r_dihedral_angle_3_deg 15.898 r_scangle_it 10.128 r_scbond_it 8.361 r_dihedral_angle_1_deg 6.673 r_mcangle_it 5.283 r_mcbond_it 4.038 r_mcbond_other 1.477 r_angle_refined_deg 1.428 r_angle_other_deg 0.817 r_symmetry_vdw_other 0.315 r_nbd_refined 0.233 r_nbd_other 0.218 r_xyhbond_nbd_refined 0.214 r_symmetry_hbond_refined 0.192 r_nbtor_refined 0.191 r_xyhbond_nbd_other 0.135 r_nbtor_other 0.093 r_symmetry_vdw_refined 0.076 r_chiral_restr 0.065 r_bond_refined_d 0.016 r_gen_planes_refined 0.015 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4778 Nucleic Acid Atoms Solvent Atoms 159 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MAR345 data collection MOSFLM data reduction SHELXD phasing autoSHARP phasing