☰ Navigation Tabs
Crystal structure of EhuB in complex with hydroxyectoine
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4 273 sodium acetate
PEG
Cadmium chloride, pH 4, VAPOR DIFFUSION, HANGING DROP, temperature 273K
Crystal Properties Matthews coefficient Solvent content 2.43 49.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.135 α = 90 b = 57.135 β = 90 c = 161.576 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MPG/DESY, HAMBURG BEAMLINE BW6 1.05 MPG/DESY, HAMBURG BW6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 20 95.5 0.055 12.6 12062
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.34 96.3 0.202 567
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.3 20 12046 589 95.58 0.236 0.235 0.2349 0.261 0.2589 RANDOM 34.252
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.49 1.49 -2.98
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.812 r_dihedral_angle_3_deg 14.658 r_dihedral_angle_4_deg 14.523 r_dihedral_angle_1_deg 5.523 r_scangle_it 1.419 r_angle_refined_deg 1.04 r_scbond_it 0.81 r_mcangle_it 0.582 r_mcbond_it 0.338 r_nbtor_refined 0.298
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.812 r_dihedral_angle_3_deg 14.658 r_dihedral_angle_4_deg 14.523 r_dihedral_angle_1_deg 5.523 r_scangle_it 1.419 r_angle_refined_deg 1.04 r_scbond_it 0.81 r_mcangle_it 0.582 r_mcbond_it 0.338 r_nbtor_refined 0.298 r_symmetry_vdw_refined 0.216 r_nbd_refined 0.178 r_metal_ion_refined 0.119 r_symmetry_hbond_refined 0.119 r_xyhbond_nbd_refined 0.112 r_chiral_restr 0.063 r_bond_refined_d 0.007 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1906 Nucleic Acid Atoms Solvent Atoms 57 Heterogen Atoms 15
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection AMoRE phasing