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Crystal structure of a putative phospho transferase (sp_1565) from streptococcus pneumoniae tigr4 at 2.00 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 NANODROP, 20.0% PEG 3350, 0.2M Potassium sodium tartrate, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.56 51.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.52 α = 90 b = 69.35 β = 90 c = 169.42 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2007-04-14 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837, 0.97917, 0.97891 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 29.553 99.1 0.029 16.26 52181 -3 44.384
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 95.8 0.355 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2 29.553 52112 2656 99.67 0.197 0.195 0.1975 0.236 0.2378 RANDOM 34.063
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.79 -0.51 -0.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.093 r_dihedral_angle_4_deg 18.784 r_dihedral_angle_3_deg 14.023 r_scangle_it 8.005 r_dihedral_angle_1_deg 6.774 r_scbond_it 5.906 r_mcangle_it 3.541 r_mcbond_it 2.387 r_angle_refined_deg 1.643 r_angle_other_deg 1.011
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.093 r_dihedral_angle_4_deg 18.784 r_dihedral_angle_3_deg 14.023 r_scangle_it 8.005 r_dihedral_angle_1_deg 6.774 r_scbond_it 5.906 r_mcangle_it 3.541 r_mcbond_it 2.387 r_angle_refined_deg 1.643 r_angle_other_deg 1.011 r_mcbond_other 0.588 r_symmetry_vdw_other 0.272 r_nbd_refined 0.212 r_nbd_other 0.188 r_nbtor_refined 0.174 r_xyhbond_nbd_refined 0.154 r_symmetry_hbond_refined 0.116 r_symmetry_vdw_refined 0.11 r_chiral_restr 0.098 r_nbtor_other 0.085 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_gen_planes_other 0.003 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4763 Nucleic Acid Atoms Solvent Atoms 282 Heterogen Atoms 15
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction MAR345 data collection XDS data reduction SHELXD phasing SHARP phasing