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Crystal structure of Alcaligenes faecalis AADH in complex with p-chlorobenzylamine.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 292 PEG 2000 MME, AMMONIUM SULPHATE, SODIUM CACODYLATE, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 2.5 50.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.541 α = 90 b = 96.762 β = 90 c = 120.13 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 30 95.4 0.08 20.9 3.2 135347
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.66 88.8 0.454 3.1 12456
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.6 15 134278 6757 95.51 0.166 0.165 0.177 0.193 0.2027 RANDOM 20.771
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.89 -0.31 -0.58
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.791 r_dihedral_angle_3_deg 11.828 r_dihedral_angle_4_deg 11.602 r_dihedral_angle_1_deg 6.922 r_scangle_it 5.9 r_scbond_it 4.055 r_mcangle_it 2.873 r_mcbond_it 2.093 r_angle_refined_deg 1.371 r_angle_other_deg 0.815
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.791 r_dihedral_angle_3_deg 11.828 r_dihedral_angle_4_deg 11.602 r_dihedral_angle_1_deg 6.922 r_scangle_it 5.9 r_scbond_it 4.055 r_mcangle_it 2.873 r_mcbond_it 2.093 r_angle_refined_deg 1.371 r_angle_other_deg 0.815 r_mcbond_other 0.724 r_nbd_refined 0.219 r_symmetry_vdw_other 0.212 r_nbd_other 0.189 r_nbtor_refined 0.175 r_symmetry_hbond_refined 0.174 r_xyhbond_nbd_refined 0.145 r_symmetry_vdw_refined 0.136 r_nbtor_other 0.093 r_chiral_restr 0.087 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7326 Nucleic Acid Atoms Solvent Atoms 1220 Heterogen Atoms 18
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction