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Crystal structure of acetyltransferase (NP_689019.1) from Streptococcus agalactiae 2603 at 2.00 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 277 NANODROP, 10.0% PEG 6000, 0.1M Citrate pH 5.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.65 53.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.985 α = 90 b = 67.985 β = 90 c = 87.772 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, toroid focusing mirror 2007-05-13 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.91837, 0.97932 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 29.437 100 0.102 0.102 5.6 9.1 16338 19.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 100 1.229 1.229 0.6 9.2 1166
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2 29.437 16309 821 99.94 0.187 0.185 0.1939 0.223 0.2324 RANDOM 38.044
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.09 0.04 0.09 -0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.839 r_dihedral_angle_4_deg 14.132 r_dihedral_angle_3_deg 12.379 r_scangle_it 5.858 r_scbond_it 4.539 r_dihedral_angle_1_deg 3.647 r_mcangle_it 2.477 r_mcbond_it 1.618 r_angle_refined_deg 1.511 r_angle_other_deg 0.942
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.839 r_dihedral_angle_4_deg 14.132 r_dihedral_angle_3_deg 12.379 r_scangle_it 5.858 r_scbond_it 4.539 r_dihedral_angle_1_deg 3.647 r_mcangle_it 2.477 r_mcbond_it 1.618 r_angle_refined_deg 1.511 r_angle_other_deg 0.942 r_mcbond_other 0.364 r_nbd_refined 0.191 r_nbtor_refined 0.182 r_xyhbond_nbd_refined 0.179 r_nbd_other 0.161 r_symmetry_vdw_other 0.126 r_chiral_restr 0.12 r_symmetry_vdw_refined 0.114 r_symmetry_hbond_refined 0.108 r_nbtor_other 0.086 r_bond_refined_d 0.018 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1362 Nucleic Acid Atoms Solvent Atoms 92 Heterogen Atoms 14
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SOLVE phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MAR345 data collection MOSFLM data reduction