☰ Navigation Tabs
Crystal structure of the cell surface heme transfer protein Shp
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 295 0.8M ammonium sulfate, 0.1M MES, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 3.12 60.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.317 α = 90 b = 82.317 β = 90 c = 106.054 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD MARMOSAIC 300 mm CCD 2007-04-16 M SINGLE WAVELENGTH 2 1 x-ray CCD MARMOSAIC 225 mm CCD 2007-03-10 M SINGLE WAVELENGTH 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 0.9793 APS 23-ID-D 2 SYNCHROTRON APS BEAMLINE 21-ID-D 1.6531 APS 21-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.1 80 99.6 0.115 20.4 10.8 23738
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2.1 2.15 95.2 0.593 2.3 7.1 1496
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.1 41.17 23696 1194 99.56 0.166 0.163 0.1646 0.222 0.2242 RANDOM 29.782
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.69 0.35 0.69 -1.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.675 r_dihedral_angle_4_deg 17.356 r_dihedral_angle_3_deg 13.947 r_dihedral_angle_1_deg 6.284 r_scangle_it 2.284 r_scbond_it 1.531 r_angle_refined_deg 1.164 r_mcangle_it 1.102 r_mcbond_it 0.718 r_nbtor_refined 0.293
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.675 r_dihedral_angle_4_deg 17.356 r_dihedral_angle_3_deg 13.947 r_dihedral_angle_1_deg 6.284 r_scangle_it 2.284 r_scbond_it 1.531 r_angle_refined_deg 1.164 r_mcangle_it 1.102 r_mcbond_it 0.718 r_nbtor_refined 0.293 r_nbd_refined 0.195 r_symmetry_hbond_refined 0.149 r_xyhbond_nbd_refined 0.146 r_symmetry_vdw_refined 0.141 r_chiral_restr 0.081 r_bond_refined_d 0.009 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2332 Nucleic Acid Atoms Solvent Atoms 323 Heterogen Atoms 226
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling SHARP phasing