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Ensemble refinement of the crystal structure of GALT-like protein from Arabidopsis thaliana At5g18200
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1Z84 PDB entry 1Z84
Crystallization Crystal Properties Matthews coefficient Solvent content 2.1 41.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.037 α = 90 b = 95.65 β = 90 c = 110.918 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray APS-1 M SINGLE WAVELENGTH
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION Re-refinement using ensemble model THROUGHOUT PDB entry 1Z84 1.834 31.28 57442 2903 97.9 0.154 0.154 0.1551 0.218 0.2106 RANDOM 20.4
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 23.9 c_scangle_it 2.24 c_scbond_it 1.93 c_angle_deg 1.8 c_mcangle_it 1.75 c_mcbond_it 1.38 c_improper_angle_d 1.27 c_bond_d 0.017
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4877 Nucleic Acid Atoms Solvent Atoms 500 Heterogen Atoms 72
Software Software Software Name Purpose CNS refinement PDB_EXTRACT data extraction CNS phasing