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Ensemble refinement of the protein crystal structure of gene product from Arabidopsis thaliana At2g19940
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1XYG PDB entry 1XYG
Crystallization Crystal Properties Matthews coefficient Solvent content 2.14 42.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.597 α = 90 b = 107.067 β = 118.88 c = 85.754 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M SINGLE WAVELENGTH
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION Re-refinement using ensemble model THROUGHOUT PDB entry 1XYG 2.19 27.31 63966 3240 92.9 0.152 0.152 0.1535 0.212 0.2089 RANDOM 36.1
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -7.68 -0.99 19.33 -11.65
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 23.5 c_scangle_it 3.25 c_mcangle_it 2.42 c_scbond_it 2.24 c_mcbond_it 1.53 c_angle_deg 1.5 c_improper_angle_d 1.05 c_bond_d 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10720 Nucleic Acid Atoms Solvent Atoms 956 Heterogen Atoms
Software Software Software Name Purpose CNS refinement PDB_EXTRACT data extraction CNS phasing