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Ensemble refinement of the protein crystal structure of gene product from Arabidopsis thaliana At2g17340
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1XFI PDB entry 1XFI
Crystallization Crystal Properties Matthews coefficient Solvent content 2.08 40.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.174 α = 74.57 b = 43.28 β = 74.6 c = 52.644 γ = 84.04
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray APS-1 M SINGLE WAVELENGTH
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION Re-refinement using ensemble model THROUGHOUT PDB entry 1XFI 1.7 34.91 35192 1763 97 0.165 0.165 0.167 0.221 0.2254 RANDOM 21.5
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 22 c_scangle_it 2.88 c_scbond_it 2.1 c_mcangle_it 2.06 c_mcbond_it 1.49 c_angle_deg 1.4 c_improper_angle_d 0.98 c_bond_d 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2696 Nucleic Acid Atoms Solvent Atoms 357 Heterogen Atoms 2
Software Software Software Name Purpose CNS refinement PDB_EXTRACT data extraction CNS phasing