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Ensemble refinement of the protein crystal structure of gene product from Arabidopsis thaliana At2g34160
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1VM0 PDB entry 1VM0
Crystallization Crystal Properties Matthews coefficient Solvent content 1.74 29.23
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.785 α = 90 b = 79.079 β = 90 c = 43.73 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M SINGLE WAVELENGTH
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION Re-refinement using ensemble model THROUGHOUT PDB entry 1VM0 1.8 29.33 19778 1026 99.7 0.169 0.169 0.1777 0.218 0.2203 RANDOM 17.5
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.08 0.08
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 23.3 c_scangle_it 3.98 c_scbond_it 2.71 c_mcangle_it 1.97 c_angle_deg 1.5 c_mcbond_it 1.45 c_improper_angle_d 0.89 c_bond_d 0.014
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1554 Nucleic Acid Atoms Solvent Atoms 161 Heterogen Atoms 18
Software Software Software Name Purpose CNS refinement PDB_EXTRACT data extraction CNS phasing