2Q3V

Ensemble refinement of the protein crystal structure of gene product from Arabidopsis thaliana At2g34160


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1VM0PDB entry 1VM0

Crystallization

Crystal Properties
Matthews coefficientSolvent content
1.7429.23

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 59.785α = 90
b = 79.079β = 90
c = 43.73γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray MSINGLE WAVELENGTH

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONRe-refinement using ensemble modelTHROUGHOUTPDB entry 1VM01.829.3319778102699.70.1690.1690.218RANDOM17.5
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.080.08
RMS Deviations
KeyRefinement Restraint Deviation
c_dihedral_angle_d23.3
c_scangle_it3.98
c_scbond_it2.71
c_mcangle_it1.97
c_angle_deg1.5
c_mcbond_it1.45
c_improper_angle_d0.89
c_bond_d0.014
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1554
Nucleic Acid Atoms
Solvent Atoms161
Heterogen Atoms18

Software

Software
Software NamePurpose
CNSrefinement
PDB_EXTRACTdata extraction
CNSphasing