2Q3T

Ensemble refinement of the protein crystal structure of gene product from Arabidopsis thaliana At3g22680


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1VK5PDB entry 1VK5

Crystallization

Crystal Properties
Matthews coefficientSolvent content
3.3863.61

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 83.45α = 90
b = 83.45β = 90
c = 60.575γ = 120
Symmetry
Space GroupP 31 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray MSINGLE WAVELENGTH

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONRe-refinement using ensemble modelTHROUGHOUTPDB entry 1VK51.631.0332203163399.90.1390.1390.17RANDOM19.2
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
c_dihedral_angle_d22.5
c_angle_deg7.2
c_improper_angle_d5.33
c_scangle_it3.31
c_scbond_it2.27
c_mcangle_it2.23
c_mcbond_it1.36
c_bond_d0.125
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1003
Nucleic Acid Atoms
Solvent Atoms172
Heterogen Atoms63

Software

Software
Software NamePurpose
CNSrefinement
PDB_EXTRACTdata extraction
CNSphasing