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Ensemble refinement of the protein crystal structure of At3g17210 from Arabidopsis thaliana
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1Q4R PDB entry 1Q4R
Crystallization Crystal Properties Matthews coefficient Solvent content 1.95 36.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.468 α = 90 b = 55.468 β = 90 c = 57.673 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M SINGLE WAVELENGTH
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION Re-refinement using ensemble model THROUGHOUT PDB entry 1Q4R 1.9 19.99 7579 369 94.6 0.182 0.182 0.1821 0.224 0.2243 RANDOM 22.6
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 23.1 c_scangle_it 2.5 c_scbond_it 1.97 c_mcangle_it 1.73 c_angle_deg 1.3 c_mcbond_it 1.3 c_improper_angle_d 0.73 c_bond_d 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 818 Nucleic Acid Atoms Solvent Atoms 109 Heterogen Atoms 1
Software Software Software Name Purpose CNS refinement PDB_EXTRACT data extraction CNS phasing