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Trypanosoma cruzi glucokinase in complex with beta-D-glucose and ADP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 289 20% PEG3350
0.4 M di-ammonium hydrogen citrate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.7 54.48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 107.937 α = 90 b = 125.697 β = 90 c = 65.112 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 180 mm plate 2006-02-25 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 0.8140, 0.9776, 0.9769, 0.9732 EMBL/DESY, HAMBURG X11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 30 99.8 0.103 18.1 6.8 52608 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.18 98.5 0.898 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.1 29.5 49734 2672 99.96 0.19716 0.19389 0.185 0.25809 0.1869 RANDOM 41.062
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.03 5.68 -3.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.717 r_dihedral_angle_4_deg 18.693 r_dihedral_angle_3_deg 16.359 r_scangle_it 5.657 r_dihedral_angle_1_deg 5.41 r_scbond_it 4.254 r_mcangle_it 2.567 r_mcbond_it 1.707 r_angle_refined_deg 1.324 r_nbtor_refined 0.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.717 r_dihedral_angle_4_deg 18.693 r_dihedral_angle_3_deg 16.359 r_scangle_it 5.657 r_dihedral_angle_1_deg 5.41 r_scbond_it 4.254 r_mcangle_it 2.567 r_mcbond_it 1.707 r_angle_refined_deg 1.324 r_nbtor_refined 0.32 r_nbd_refined 0.254 r_symmetry_hbond_refined 0.233 r_xyhbond_nbd_refined 0.203 r_chiral_restr 0.114 r_symmetry_vdw_refined 0.107 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5714 Nucleic Acid Atoms Solvent Atoms 486 Heterogen Atoms 78
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection DENZO data reduction SCALEPACK data scaling SHARP phasing