☰ Navigation Tabs
Crystal structure of oxalyl-coA decarboxylase from Escherichia coli in complex with acetyl coenzyme A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 281 6% PEG4000, 0.2M sodium acetate. 0.0025M thiamine diphosphate, 0.0025M magnesium sulfate, 0.001M acetyl coenzyme A, VAPOR DIFFUSION, HANGING DROP, temperature 281K
Crystal Properties Matthews coefficient Solvent content 2.93 57.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 132.57 α = 90 b = 145.53 β = 90 c = 147.19 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 225 mm 2007-02-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7A 0.9785 EMBL/DESY, HAMBURG BW7A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.82 99 100 0.052 14.6 7.2 126889
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.82 1.85 99.9 0.257 6.7 6263
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.82 42.3 126549 1275 99.76 0.175 0.175 0.1743 0.194 0.1915 RANDOM 19.584
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.611 r_dihedral_angle_4_deg 15.454 r_dihedral_angle_3_deg 12.434 r_dihedral_angle_1_deg 5.684 r_scangle_it 3.549 r_scbond_it 2.207 r_angle_refined_deg 1.443 r_mcangle_it 1.261 r_mcbond_it 0.826 r_nbtor_refined 0.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.611 r_dihedral_angle_4_deg 15.454 r_dihedral_angle_3_deg 12.434 r_dihedral_angle_1_deg 5.684 r_scangle_it 3.549 r_scbond_it 2.207 r_angle_refined_deg 1.443 r_mcangle_it 1.261 r_mcbond_it 0.826 r_nbtor_refined 0.303 r_symmetry_vdw_refined 0.21 r_nbd_refined 0.2 r_symmetry_hbond_refined 0.155 r_xyhbond_nbd_refined 0.11 r_chiral_restr 0.102 r_bond_refined_d 0.014 r_metal_ion_refined 0.014 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8236 Nucleic Acid Atoms Solvent Atoms 661 Heterogen Atoms 140
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction MAR345dtb data collection HKL-2000 data reduction