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Crystal structure of BAR-PH domain of APPL1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 298 6% PEG6000, 0.6M NaCl, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.26 45.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 103.737 α = 90 b = 105.675 β = 90 c = 36.407 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2006-03-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.0 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 50 89.9 0.067 16.4 4.5 23286 23286 -6 -3 38.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.05 2.12 78 0.432 2.7 3.2 1989
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.05 50 22082 22082 1200 89.87 0.208 0.208 0.205 0.268 0.292 RANDOM 45.594
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.72 2.66 -0.94
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.334 r_dihedral_angle_4_deg 21.536 r_dihedral_angle_3_deg 18.412 r_dihedral_angle_1_deg 5.196 r_scangle_it 4.848 r_mcangle_it 4.047 r_scbond_it 3.313 r_mcbond_it 2.777 r_angle_refined_deg 1.302 r_nbtor_refined 0.297
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.334 r_dihedral_angle_4_deg 21.536 r_dihedral_angle_3_deg 18.412 r_dihedral_angle_1_deg 5.196 r_scangle_it 4.848 r_mcangle_it 4.047 r_scbond_it 3.313 r_mcbond_it 2.777 r_angle_refined_deg 1.302 r_nbtor_refined 0.297 r_nbd_refined 0.206 r_symmetry_hbond_refined 0.197 r_symmetry_vdw_refined 0.174 r_xyhbond_nbd_refined 0.152 r_chiral_restr 0.089 r_bond_refined_d 0.013 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2943 Nucleic Acid Atoms Solvent Atoms 157 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling SHARP phasing