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Crystal structure of GCN5-related N-acetyltransferase (YP_295895.1) from Ralstonia eutropha JMP134 at 1.80 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.9 277 NANODROP, 0.2M Mg Formate, 20.0% PEG 3350, No Buffer pH 5.9, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.53 65.15
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 102.52 α = 90 b = 102.52 β = 90 c = 39.68 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2007-04-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.97891 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 29.591 96.1 0.05 11.78 3.61 21939 -3 17.93
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 81.3 0.298 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.8 29.591 21936 1123 97.88 0.144 0.143 0.1554 0.165 0.1783 RANDOM 14.876
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.71 0.36 0.71 -1.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.257 r_dihedral_angle_4_deg 18.484 r_dihedral_angle_3_deg 11.315 r_scangle_it 6.332 r_dihedral_angle_1_deg 5.395 r_scbond_it 4.491 r_mcangle_it 2.482 r_mcbond_it 1.953 r_angle_refined_deg 1.344 r_angle_other_deg 0.836
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.257 r_dihedral_angle_4_deg 18.484 r_dihedral_angle_3_deg 11.315 r_scangle_it 6.332 r_dihedral_angle_1_deg 5.395 r_scbond_it 4.491 r_mcangle_it 2.482 r_mcbond_it 1.953 r_angle_refined_deg 1.344 r_angle_other_deg 0.836 r_mcbond_other 0.42 r_nbd_refined 0.256 r_metal_ion_refined 0.237 r_nbd_other 0.187 r_symmetry_vdw_other 0.187 r_symmetry_vdw_refined 0.182 r_nbtor_refined 0.177 r_symmetry_hbond_refined 0.16 r_xyhbond_nbd_refined 0.157 r_nbtor_other 0.089 r_chiral_restr 0.072 r_symmetry_metal_ion_refined 0.046 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1180 Nucleic Acid Atoms Solvent Atoms 206 Heterogen Atoms 23
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SOLVE phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction MAR345 data collection XDS data reduction