☰ Navigation Tabs
Structure of Pseudomonas Quinolone Signal Response Protein PqsE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 292 100 mM imidazole, 0.6 M NaAc, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 2.28 46.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.76 α = 90 b = 66.09 β = 97.19 c = 110.26 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2006-02-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.9786 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 19.82 97.8 0.071 13.73 36642 -3 32.976
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.1 2.2 97.5 0.357 4.6 4717
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.1 19.82 36641 1854 97.96 0.154 0.151 0.211 0.2093 RANDOM 25.76
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.402 r_dihedral_angle_4_deg 19.31 r_dihedral_angle_3_deg 16.044 r_dihedral_angle_1_deg 6.366 r_angle_other_deg 4.175 r_scangle_it 4.003 r_scbond_it 2.798 r_angle_refined_deg 1.731 r_mcangle_it 1.51 r_mcbond_it 0.901
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.402 r_dihedral_angle_4_deg 19.31 r_dihedral_angle_3_deg 16.044 r_dihedral_angle_1_deg 6.366 r_angle_other_deg 4.175 r_scangle_it 4.003 r_scbond_it 2.798 r_angle_refined_deg 1.731 r_mcangle_it 1.51 r_mcbond_it 0.901 r_symmetry_vdw_refined 0.537 r_symmetry_vdw_other 0.349 r_nbd_other 0.26 r_symmetry_hbond_refined 0.259 r_nbd_refined 0.236 r_xyhbond_nbd_refined 0.198 r_nbtor_refined 0.18 r_chiral_restr 0.11 r_nbtor_other 0.11 r_metal_ion_refined 0.053 r_bond_refined_d 0.019 r_gen_planes_other 0.014 r_gen_planes_refined 0.008 r_bond_other_d r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4854 Nucleic Acid Atoms Solvent Atoms 376 Heterogen Atoms 22
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction PHASER phasing