☰ Navigation Tabs
Crystal structure of the Bordetella bronchiseptica enzyme WbmG in complex with NAD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293 0.1 M Tris, 0.2 M MgCl2, 16-18 % (w/w) PEG 8000, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.52 51.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 192.041 α = 90 b = 49.76 β = 101.13 c = 76.023 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2004-12-13 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX14.1 1.488, 0.97905 , 0.97938, 0.97668 SRS PX14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 30 97.6 0.075 16.9 3.83 39612 38661 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.1 2.15 79.2 0.483 2.14 3.08
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.1 26.83 39612 38661 2060 97.61 0.188 0.1883 0.18549 0.24207 0.2474 RANDOM 34.162
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.1 -0.05 1.77 -1.69
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.706 r_dihedral_angle_4_deg 14.691 r_dihedral_angle_3_deg 13.857 r_dihedral_angle_1_deg 9.718 r_scangle_it 2.899 r_scbond_it 2.036 r_angle_refined_deg 1.598 r_mcangle_it 1.344 r_mcbond_it 0.797 r_nbtor_refined 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.706 r_dihedral_angle_4_deg 14.691 r_dihedral_angle_3_deg 13.857 r_dihedral_angle_1_deg 9.718 r_scangle_it 2.899 r_scbond_it 2.036 r_angle_refined_deg 1.598 r_mcangle_it 1.344 r_mcbond_it 0.797 r_nbtor_refined 0.3 r_nbd_refined 0.197 r_symmetry_vdw_refined 0.158 r_xyhbond_nbd_refined 0.138 r_symmetry_hbond_refined 0.124 r_chiral_restr 0.114 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4643 Nucleic Acid Atoms Solvent Atoms 316 Heterogen Atoms 89
Software Software Software Name Purpose REFMAC refinement ADSC data collection DENZO data reduction SCALEPACK data scaling PHENIX phasing