☰ Navigation Tabs
Crystal structure of putative transcriptional regulator SCO4942 from Streptomyces coelicolor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 277 0.1M Tris-HCl pH 8.5, 2.5M Ammonium sulfate, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.76 55.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.96 α = 90 b = 66.96 β = 90 c = 104.345 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 MIRROR 2007-02-09 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9792, 0.9794 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 38.78 99.6 0.084 0.084 46.985 10.7 7016 -3 84.38
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.9 96.4 0.299 0.299 5.3 7.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.8 38.78 7004 337 100 0.216 0.213 0.2151 0.269 0.2719 RANDOM 64
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.43 0.71 1.43 -2.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.669 r_dihedral_angle_3_deg 21.891 r_dihedral_angle_4_deg 16.628 r_dihedral_angle_1_deg 6.041 r_scangle_it 2.79 r_scbond_it 1.724 r_angle_refined_deg 1.486 r_mcangle_it 1.198 r_mcbond_it 0.874 r_nbtor_refined 0.308
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.669 r_dihedral_angle_3_deg 21.891 r_dihedral_angle_4_deg 16.628 r_dihedral_angle_1_deg 6.041 r_scangle_it 2.79 r_scbond_it 1.724 r_angle_refined_deg 1.486 r_mcangle_it 1.198 r_mcbond_it 0.874 r_nbtor_refined 0.308 r_nbd_refined 0.251 r_symmetry_vdw_refined 0.242 r_symmetry_hbond_refined 0.193 r_xyhbond_nbd_refined 0.145 r_chiral_restr 0.089 r_bond_refined_d 0.016 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1391 Nucleic Acid Atoms Solvent Atoms 10 Heterogen Atoms 20
Software Software Software Name Purpose HKL-2000 data collection HKL-2000 data reduction HKL-3000 phasing MLPHARE phasing DM model building SHELXD phasing O model building SOLVE phasing SHELXE model building RESOLVE model building Coot model building CCP4 model building REFMAC refinement ADSC data collection HKL-2000 data scaling DM phasing RESOLVE phasing CCP4 phasing