☰ Navigation Tabs
Protein-RNA Interaction involving KH1 domain from Human Poly(C)-Binding Protein-2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.1 295 25% PEG 8000, 100mM sodium acetate, 100mM sodium cacodylate pH 6.1, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.41 48.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 92.006 α = 90 b = 58.697 β = 90 c = 71.496 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 KOHZU: Double Crystal Si(111) 2005-01-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.11588 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.56 70.1 94.2 0.102 0.096 14.4 10.4 12378 11660 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.56 2.626 90.73 0.9 3.1 9.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.56 40 2 2 11656 591 94.21 0.22038 0.21798 0.2345 0.26862 0.2746 RANDOM 38.229
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.61 -0.13 1.74
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 45.4 r_dihedral_angle_4_deg 27.656 r_dihedral_angle_3_deg 24.3 r_dihedral_angle_1_deg 8.475 r_scangle_it 5.004 r_scbond_it 3.42 r_angle_refined_deg 3.306 r_mcangle_it 2.139 r_mcbond_it 1.553 r_nbtor_refined 0.338
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 45.4 r_dihedral_angle_4_deg 27.656 r_dihedral_angle_3_deg 24.3 r_dihedral_angle_1_deg 8.475 r_scangle_it 5.004 r_scbond_it 3.42 r_angle_refined_deg 3.306 r_mcangle_it 2.139 r_mcbond_it 1.553 r_nbtor_refined 0.338 r_symmetry_vdw_refined 0.321 r_nbd_refined 0.286 r_xyhbond_nbd_refined 0.173 r_chiral_restr 0.155 r_symmetry_hbond_refined 0.14 r_bond_refined_d 0.032 r_gen_planes_refined 0.011 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2132 Nucleic Acid Atoms 490 Solvent Atoms 51 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement Blu-Ice data collection MOSFLM data reduction SCALA data scaling CNS phasing