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Human putative methyltransferase MGC2408
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 5.5 291 28% PEG3350, 0.1 M Ammonium sulfate, 0.1 M Bis-Tris, pH 5.5, VAPOR DIFFUSION, temperature 291K
Crystal Properties Matthews coefficient Solvent content 1.8 32.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.883 α = 90 b = 45.56 β = 105.87 c = 55.102 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2007-04-16 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD ADSC QUANTUM 210 2007-05-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 0.97926 APS 23-ID-D 2 SYNCHROTRON CHESS BEAMLINE A1 0.9777 CHESS A1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.3 70 96.2 0.096 8.2 6.2 40375
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.3 1.35 74.1 0.28 3.1 3089
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.3 30 40353 2052 95.78 0.211 0.21 0.2144 0.226 0.2332 RANDOM 7.181
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.25 -0.13 0.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.047 r_dihedral_angle_4_deg 21.258 r_dihedral_angle_3_deg 13.064 r_dihedral_angle_1_deg 5.656 r_scangle_it 2.271 r_mcangle_it 1.914 r_scbond_it 1.688 r_mcbond_it 1.602 r_angle_refined_deg 1.317 r_angle_other_deg 0.899
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.047 r_dihedral_angle_4_deg 21.258 r_dihedral_angle_3_deg 13.064 r_dihedral_angle_1_deg 5.656 r_scangle_it 2.271 r_mcangle_it 1.914 r_scbond_it 1.688 r_mcbond_it 1.602 r_angle_refined_deg 1.317 r_angle_other_deg 0.899 r_mcbond_other 0.526 r_symmetry_vdw_other 0.25 r_nbd_refined 0.202 r_symmetry_vdw_refined 0.195 r_nbd_other 0.19 r_nbtor_refined 0.184 r_xyhbond_nbd_refined 0.088 r_nbtor_other 0.085 r_symmetry_hbond_refined 0.084 r_chiral_restr 0.082 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1668 Nucleic Acid Atoms Solvent Atoms 135 Heterogen Atoms 27
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SHELX phasing REFMAC refinement PDB_EXTRACT data extraction ADSC data collection