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Crystal Structure of HIV-1 CA146 in the Presence of CAP-1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 286 100 mM Tris pH, 5% PEG 8000, 20% PEG 300, 10% glycerol, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 286K
Crystal Properties Matthews coefficient Solvent content 2.18 43.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.187 α = 90 b = 62.777 β = 90 c = 106.286 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2005-04-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X12B 1.000 NSLS X12B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 53.15 95.7 0.049 0.049 5.6 2.9 22915 21930 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.58 78.5 0.318 0.318 2.2 2.1 2570
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.5 53.15 2 22915 21916 1107 95.2 0.166 0.166 0.163 0.1621 0.221 0.2218 RANDOM 24.635
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.9 -1.16 0.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.792 r_dihedral_angle_4_deg 20.499 r_dihedral_angle_3_deg 14.835 r_sphericity_free 8.637 r_sphericity_bonded 7.007 r_scangle_it 5.544 r_dihedral_angle_1_deg 5.519 r_scbond_it 3.757 r_mcangle_it 2.961 r_rigid_bond_restr 2.506
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.792 r_dihedral_angle_4_deg 20.499 r_dihedral_angle_3_deg 14.835 r_sphericity_free 8.637 r_sphericity_bonded 7.007 r_scangle_it 5.544 r_dihedral_angle_1_deg 5.519 r_scbond_it 3.757 r_mcangle_it 2.961 r_rigid_bond_restr 2.506 r_mcbond_it 2.024 r_angle_refined_deg 1.873 r_nbtor_refined 0.31 r_symmetry_vdw_refined 0.262 r_nbd_refined 0.239 r_symmetry_hbond_refined 0.239 r_xyhbond_nbd_refined 0.188 r_chiral_restr 0.13 r_symmetry_metal_ion_refined 0.063 r_bond_refined_d 0.02 r_gen_planes_refined 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1129 Nucleic Acid Atoms Solvent Atoms 179 Heterogen Atoms 3
Software Software Software Name Purpose SCALA data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction DNA data collection MOSFLM data reduction