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Crystal structure of a putative formate dehydrogenase accessory protein from Desulfotalea psychrophila
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6.5 294 100 mM Sodium MES pH 6.5, 22% PEG 8000, 200 mM Ammonium sulfate, VAPOR DIFFUSION, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.18 43.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.987 α = 90 b = 99.257 β = 109.7 c = 88.502 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2007-04-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.97958 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 25.375 98.2 0.108 0.108 12.4 3.8 57870 57870 25.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.21 97.4 0.434 0.434 2.6 3.6 8392
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.1 20 57805 57805 2937 98.24 0.199 0.196 0.259 0.2439 RANDOM 35.581
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.39 -0.04 3.04 -0.68
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.588 r_dihedral_angle_4_deg 22.278 r_dihedral_angle_3_deg 18.589 r_dihedral_angle_1_deg 6.772 r_scangle_it 4.419 r_scbond_it 2.804 r_mcangle_it 1.679 r_angle_refined_deg 1.651 r_mcbond_it 1.045 r_nbtor_refined 0.308
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.588 r_dihedral_angle_4_deg 22.278 r_dihedral_angle_3_deg 18.589 r_dihedral_angle_1_deg 6.772 r_scangle_it 4.419 r_scbond_it 2.804 r_mcangle_it 1.679 r_angle_refined_deg 1.651 r_mcbond_it 1.045 r_nbtor_refined 0.308 r_symmetry_vdw_refined 0.237 r_nbd_refined 0.217 r_symmetry_hbond_refined 0.196 r_xyhbond_nbd_refined 0.181 r_chiral_restr 0.115 r_bond_refined_d 0.017 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7064 Nucleic Acid Atoms Solvent Atoms 304 Heterogen Atoms 10
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection MOSFLM data reduction SHELXCD phasing SHELXE model building