☰ Navigation Tabs
Crystal structure of uncharacterized protein JW3007 from Escherichia coli K12
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 293 2 microliter drops containing equal volumes of protein concentrate (11.38 mg/ml) in 20mM Tris-HCl, 200mM NaCl, 1mM DTT and resevoir solution containing 0.1M Hepes, 0.8M Sodium acetate, and 0.05M Cadmium sulfate, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.85 56.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 83.94 α = 90 b = 83.94 β = 90 c = 85.509 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD ROSENBAUM 2006-08-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 0.97243 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.27 72.74 99.6 0.096 18.1 20.7 16342 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.27 2.35 100 0.63 5.63 20.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.27 72.74 15481 825 99.4 0.23616 0.23457 0.2319 0.2667 0.2627 RANDOM 48.677
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.98 -0.49 -0.98 1.47
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.492 r_dihedral_angle_4_deg 22.464 r_dihedral_angle_3_deg 15.814 r_dihedral_angle_1_deg 7.772 r_scangle_it 3.008 r_scbond_it 2.197 r_angle_refined_deg 1.703 r_mcangle_it 1.554 r_mcbond_it 1.022 r_symmetry_metal_ion_refined 0.482
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.492 r_dihedral_angle_4_deg 22.464 r_dihedral_angle_3_deg 15.814 r_dihedral_angle_1_deg 7.772 r_scangle_it 3.008 r_scbond_it 2.197 r_angle_refined_deg 1.703 r_mcangle_it 1.554 r_mcbond_it 1.022 r_symmetry_metal_ion_refined 0.482 r_nbtor_refined 0.308 r_symmetry_hbond_refined 0.245 r_symmetry_vdw_refined 0.228 r_nbd_refined 0.213 r_xyhbond_nbd_refined 0.142 r_chiral_restr 0.122 r_metal_ion_refined 0.055 r_bond_refined_d 0.016 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1869 Nucleic Acid Atoms Solvent Atoms 51 Heterogen Atoms 3
Software Software Software Name Purpose SCA2STRUCTURE model building REFMAC refinement SERGUI data collection HKL-2000 data reduction SCALEPACK data scaling SCA2STRUCTURE phasing