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DNMT3L recognizes unmethylated histone H3 lysine 4
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2PV0 PDB ENTRY 2PV0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 300 12 % polyethylene glycol, 0.2 M sodium citrate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 300K, pH 7.50
Crystal Properties Matthews coefficient Solvent content 5.89 79.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 267.7 α = 90 b = 267.7 β = 90 c = 150 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 173 CCD MARMOSAIC 300 mm CCD 2006-10-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.69 35 89.4 0.105 11.6 8 30684 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 3.69 3.83 89.4 0.496 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2PV0 3.69 34.41 30239 1512 88.4 0.264 0.264 0.2396 0.302 0.2611 RANDOM 136.4
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.13 24.8 -4.13 8.25
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 23.7 c_scangle_it 12.76 c_mcangle_it 10.64 c_scbond_it 8.39 c_mcbond_it 6.46 c_angle_deg 1.4 c_improper_angle_d 1.05 c_bond_d 0.008 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 23.7 c_scangle_it 12.76 c_mcangle_it 10.64 c_scbond_it 8.39 c_mcbond_it 6.46 c_angle_deg 1.4 c_improper_angle_d 1.05 c_bond_d 0.008 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8517 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 9
Software Software Software Name Purpose MAR345dtb data collection CNS refinement HKL-2000 data reduction HKL-2000 data scaling CNS phasing