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Unprecedented activation mechanism of a non-canonical RNA-dependent RNA polymerase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298 10-12% PEG 3350, 0.3-0.5M LiNO3, pH 6.5 to 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 4.22 70.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 123.171 α = 90 b = 123.171 β = 90 c = 362.216 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 200 CCD MARMOSAIC 225 mm CCD 2005-05-01 M SINGLE WAVELENGTH 2 1 x-ray 200 CCD MAR CCD 165 mm 2005-11-04 M MAD 3 1 x-ray 200 CCD MAR CCD 165 mm 2005-11-04 M SINGLE WAVELENGTH 1,2,3 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 1.072 ESRF ID23-1 2 SYNCHROTRON ESRF BEAMLINE BM16 1.8449, 1.6059 ESRF BM16 3 SYNCHROTRON ESRF BEAMLINE BM16 1.776 ESRF BM16
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2,3 2.4 40 97.6 0.09 21.4 9 67915 67444
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2,3 2.4 2.49 81.5 0.27 1.9 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD + Molec Replacement THROUGHOUT 2.4 19.89 61373 58279 3094 95.41 0.23544 0.23401 0.26258 0.2868 RANDOM 39.717
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.01 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.826 r_dihedral_angle_4_deg 16.326 r_dihedral_angle_3_deg 14.204 r_dihedral_angle_1_deg 4.232 r_angle_refined_deg 0.922 r_scangle_it 0.842 r_scbond_it 0.489 r_mcangle_it 0.455 r_nbtor_refined 0.291 r_mcbond_it 0.251
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.826 r_dihedral_angle_4_deg 16.326 r_dihedral_angle_3_deg 14.204 r_dihedral_angle_1_deg 4.232 r_angle_refined_deg 0.922 r_scangle_it 0.842 r_scbond_it 0.489 r_mcangle_it 0.455 r_nbtor_refined 0.291 r_mcbond_it 0.251 r_nbd_refined 0.161 r_symmetry_vdw_refined 0.136 r_symmetry_hbond_refined 0.097 r_xyhbond_nbd_refined 0.093 r_chiral_restr 0.058 r_bond_refined_d 0.006 r_gen_planes_refined 0.002 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5917 Nucleic Acid Atoms Solvent Atoms 268 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction ADSC data collection DENZO data reduction SCALEPACK data scaling SHARP phasing