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Crystal structure of the binary complex between ferredoxin: thioredoxin reductase and thioredoxin m
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 288 pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 288K
Crystal Properties Matthews coefficient Solvent content 2.53 51.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.952 α = 90 b = 42.223 β = 90.29 c = 145.344 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 145.865 99.8 0.1 0.1 5.5 3.6 13477
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.16 99.7 0.291 0.291 2.5 3.5 1920
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3 30 13469 663 99.85 0.237 0.235 0.2314 0.284 0.2822 RANDOM 51.898
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.21 2.01 -1.43 -2.76
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.667 r_dihedral_angle_4_deg 18.792 r_dihedral_angle_3_deg 17.671 r_dihedral_angle_1_deg 5.015 r_angle_refined_deg 1.505 r_scangle_it 0.817 r_mcangle_it 0.578 r_scbond_it 0.48 r_mcbond_it 0.318 r_nbtor_refined 0.301
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.667 r_dihedral_angle_4_deg 18.792 r_dihedral_angle_3_deg 17.671 r_dihedral_angle_1_deg 5.015 r_angle_refined_deg 1.505 r_scangle_it 0.817 r_mcangle_it 0.578 r_scbond_it 0.48 r_mcbond_it 0.318 r_nbtor_refined 0.301 r_nbd_refined 0.194 r_symmetry_vdw_refined 0.194 r_symmetry_hbond_refined 0.128 r_xyhbond_nbd_refined 0.108 r_chiral_restr 0.066 r_bond_refined_d 0.008 r_gen_planes_refined 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4562 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 16
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction ADSC data collection MOSFLM data reduction MOLREP phasing