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Crystal Structure Of Shikimate Kinase (aq_2177) From Aquifex Aeolicus vf5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 4.8 293 27.5% PEG 4000, 0.1M Acetate-NaOH, 10% Dioxane, pH4.8, microbatch, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.89 34.77
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.598 α = 90 b = 57.932 β = 90.59 c = 97.143 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RH Coated Bent-Cyrindrical MIRROR 2006-12-17 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL26B2 0.9790, 0.97943, 0.9000 SPring-8 BL26B2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 50 99.6 0.072 0.079 33586 41.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.18 99.2 0.306 0.336 3300
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.1 38.53 32667 1612 96.8 0.214 0.214 0.2137 0.269 0.2696 RANDOM 49.7
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.84 2.47 -2.72 7.56
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 21 c_angle_deg 1.2 c_improper_angle_d 0.75 c_bond_d 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5180 Nucleic Acid Atoms Solvent Atoms 262 Heterogen Atoms 11
Software Software Software Name Purpose CNS refinement HKL-2000 data collection HKL-2000 data reduction SCALEPACK data scaling SOLVE phasing