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Crystal Structures of the Luciferase and Green Fluorescent Protein from Renilla Reniformis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 0.3M NaCl, 1.25M diammonium phosphate, 0.1M imidazole, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.67 53.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 119.468 α = 90 b = 119.468 β = 90 c = 47.995 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 50 73121
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.4 50 73121 3868 99.82 0.16631 0.16539 0.1746 0.18341 0.1942 RANDOM 21.001
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.51 0.25 0.51 -0.76
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.99 r_dihedral_angle_4_deg 18.615 r_dihedral_angle_3_deg 12.574 r_dihedral_angle_1_deg 5.799 r_scangle_it 2.468 r_scbond_it 1.746 r_angle_refined_deg 1.372 r_mcangle_it 0.891 r_angle_other_deg 0.843 r_mcbond_it 0.802
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.99 r_dihedral_angle_4_deg 18.615 r_dihedral_angle_3_deg 12.574 r_dihedral_angle_1_deg 5.799 r_scangle_it 2.468 r_scbond_it 1.746 r_angle_refined_deg 1.372 r_mcangle_it 0.891 r_angle_other_deg 0.843 r_mcbond_it 0.802 r_symmetry_vdw_other 0.283 r_nbd_refined 0.215 r_nbd_other 0.189 r_nbtor_refined 0.189 r_symmetry_hbond_refined 0.178 r_mcbond_other 0.167 r_xyhbond_nbd_refined 0.118 r_chiral_restr 0.093 r_nbtor_other 0.082 r_symmetry_vdw_refined 0.058 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2502 Nucleic Acid Atoms Solvent Atoms 384 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement