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Crystal structure of an uncharacterized protein (yobk, bsu18990) from bacillus subtilis at 1.30 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 293 NANODROP, 2.5M Ammonium sulfate, 0.15M Potassium sodium tartrate, 0.1M Citric acid pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.16 42.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.128 α = 84.54 b = 45.2 β = 67.52 c = 48.083 γ = 73.12
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2007-04-06 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837, 0.97928, 0.97895 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 24.268 94.5 0.055 0.055 7.2 3.9 69476
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.3 1.33 92.3 0.524 0.524 1.4 3.9 5045
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.3 24.268 69476 3498 94.54 0.137 0.137 0.135 0.1442 0.175 0.1824 RANDOM 14.001
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.85 0.93 0.82 -0.65 -0.21 1.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.173 r_dihedral_angle_4_deg 25.872 r_dihedral_angle_3_deg 13.309 r_sphericity_free 7.676 r_scangle_it 7.009 r_dihedral_angle_1_deg 6.444 r_scbond_it 5.472 r_sphericity_bonded 5.316 r_mcangle_it 3.993 r_mcbond_it 3.222
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.173 r_dihedral_angle_4_deg 25.872 r_dihedral_angle_3_deg 13.309 r_sphericity_free 7.676 r_scangle_it 7.009 r_dihedral_angle_1_deg 6.444 r_scbond_it 5.472 r_sphericity_bonded 5.316 r_mcangle_it 3.993 r_mcbond_it 3.222 r_rigid_bond_restr 2.503 r_mcbond_other 2.137 r_angle_refined_deg 1.66 r_angle_other_deg 1.111 r_symmetry_vdw_other 0.272 r_symmetry_vdw_refined 0.229 r_nbd_refined 0.221 r_nbtor_refined 0.194 r_nbd_other 0.192 r_chiral_restr 0.189 r_symmetry_hbond_refined 0.172 r_xyhbond_nbd_refined 0.155 r_nbtor_other 0.092 r_bond_refined_d 0.017 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2483 Nucleic Acid Atoms Solvent Atoms 248 Heterogen Atoms 70
Software Software Software Name Purpose MolProbity model building SHELX phasing REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction MAR345 data collection MOSFLM data reduction autoSHARP phasing