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MYST histone acetyltransferase 1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2GIV PDB entry 2GIV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 291 24% PEG3350, 0.2 M Ammonium chloride, VAPOR DIFFUSION, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.3 45.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.06 α = 90 b = 64.172 β = 90 c = 93.383 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2006-11-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.0000 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 50 99.5 0.047 16.4 6.4 49643
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.45 1.5 97 0.594 5
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB entry 2GIV 1.45 30 49566 2536 99.49 0.206 0.2049 0.2123 0.2308 0.2361 16.276
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.08 0.351 -0.431
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.524 r_dihedral_angle_3_deg 11.687 r_dihedral_angle_4_deg 9.129 r_dihedral_angle_1_deg 6.006 r_scangle_it 3.239 r_mcangle_it 2.636 r_scbond_it 2.423 r_mcbond_it 1.927 r_angle_refined_deg 1.392 r_angle_other_deg 0.865
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.524 r_dihedral_angle_3_deg 11.687 r_dihedral_angle_4_deg 9.129 r_dihedral_angle_1_deg 6.006 r_scangle_it 3.239 r_mcangle_it 2.636 r_scbond_it 2.423 r_mcbond_it 1.927 r_angle_refined_deg 1.392 r_angle_other_deg 0.865 r_mcbond_other 0.537 r_nbd_refined 0.213 r_symmetry_vdw_other 0.199 r_nbtor_refined 0.189 r_symmetry_hbond_refined 0.189 r_nbd_other 0.187 r_xyhbond_nbd_refined 0.108 r_chiral_restr 0.092 r_nbtor_other 0.086 r_symmetry_vdw_refined 0.082 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_metal_ion_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2123 Nucleic Acid Atoms Solvent Atoms 149 Heterogen Atoms 62
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction ADSC data collection