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NMR solution structure of NapD in complex with NapA1-35 signal peptide
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D_15N-separated_NOESY 1.3 mM NAPD U-15N and/or U-13C, 1.6 mM NAPA1-35 50mM Sodium phosphate buffer, 0.15M NaCl, 0.02% NaN3, 0.001M DTT, 0.2mM PMSF, pH 5.9, 10% D2O or 100% D2O 50mM NaHPO4, 0.150M NaCl 5.9 1 atm 312.4 2 3D_13C-separated_NOESY 1.3 mM NAPD U-15N and/or U-13C, 1.6 mM NAPA1-35 50mM Sodium phosphate buffer, 0.15M NaCl, 0.02% NaN3, 0.001M DTT, 0.2mM PMSF, pH 5.9, 10% D2O or 100% D2O 50mM NaHPO4, 0.150M NaCl 5.9 1 atm 312.4 3 3D_15N/13C-FILTERED/EDITED NOESY 1.3 mM NAPD U-15N and/or U-13C, 1.6 mM NAPA1-35 50mM Sodium phosphate buffer, 0.15M NaCl, 0.02% NaN3, 0.001M DTT, 0.2mM PMSF, pH 5.9, 10% D2O or 100% D2O 50mM NaHPO4, 0.150M NaCl 5.9 1 atm 312.4 4 2D_15N/13C-DOUBLE FILTERED NOESY 1.3 mM NAPD U-15N and/or U-13C, 1.6 mM NAPA1-35 50mM Sodium phosphate buffer, 0.15M NaCl, 0.02% NaN3, 0.001M DTT, 0.2mM PMSF, pH 5.9, 10% D2O or 100% D2O 50mM NaHPO4, 0.150M NaCl 5.9 1 atm 312.4
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 500 2 Varian INOVA 800
NMR Refinement Method Details Software CYANA2.1 TORSION ANGLE DYNAMICS XPLOR-NIH NMR 2112 REFINE algorithm for structure refinement CYANA
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 40 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 structure solution CYANA 2.1 Guntert, P. 2 data analysis CARA/NEASY 1.5.5 Keller, R. 3 processing XwinNMR 3.5 Bruker BioSpin 4 processing NMRPipe 2.2 Delaglio, F., Grzesiek, S., Bax, A. 5 refinement X-PLOR-NIH NMR 2.11.2 Schwieters, C.D., Kuszewski, J.J., Tjandra, N., Clore, G.M.