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Oxidized H145A mutant of AfNiR bound to nitric oxide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.5 298 6-11% polyethylene glycol 6000, 0.1 M ammonium sulfate and 0.01 M sodium acetate buffer, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.04 39.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.957 α = 90 b = 102.062 β = 90 c = 145.797 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2005-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL1-5 SSRL BL1-5
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 30 0.055 3.4 85250
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 0.522 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 83.62 79536 4208 98.5 0.18922 0.18799 0.1877 0.21228 0.211 RANDOM 28.926
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.36 -0.05 -1.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.846 r_dihedral_angle_4_deg 21.403 r_dihedral_angle_3_deg 12.839 r_dihedral_angle_1_deg 6.771 r_scangle_it 2.627 r_scbond_it 1.748 r_angle_refined_deg 1.281 r_mcangle_it 1.086 r_mcbond_it 0.716 r_nbtor_refined 0.308
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.846 r_dihedral_angle_4_deg 21.403 r_dihedral_angle_3_deg 12.839 r_dihedral_angle_1_deg 6.771 r_scangle_it 2.627 r_scbond_it 1.748 r_angle_refined_deg 1.281 r_mcangle_it 1.086 r_mcbond_it 0.716 r_nbtor_refined 0.308 r_symmetry_vdw_refined 0.193 r_nbd_refined 0.189 r_symmetry_hbond_refined 0.162 r_xyhbond_nbd_refined 0.106 r_chiral_restr 0.089 r_metal_ion_refined 0.079 r_bond_refined_d 0.01 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7672 Nucleic Acid Atoms Solvent Atoms 603 Heterogen Atoms 21
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling AMoRE phasing