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Formate bound to oxidized wild type AfNiR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4 298 6-11% PEG 4000, 100mM sodium acetate, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.07 40.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.334 α = 90 b = 102.453 β = 90 c = 146.179 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate 2005-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-1 0.97 SSRL BL9-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 30 0.037 3.6 147552
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.55 0.451 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.5 30 126965 6670 90.3 0.16575 0.16391 0.20119 0.2053 RANDOM 19.138
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.32 -1.03 -0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.972 r_dihedral_angle_4_deg 20.143 r_dihedral_angle_3_deg 12.16 r_dihedral_angle_1_deg 6.765 r_sphericity_free 3.825 r_scangle_it 2.68 r_sphericity_bonded 2.588 r_scbond_it 1.956 r_rigid_bond_restr 1.307 r_angle_refined_deg 1.288
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.972 r_dihedral_angle_4_deg 20.143 r_dihedral_angle_3_deg 12.16 r_dihedral_angle_1_deg 6.765 r_sphericity_free 3.825 r_scangle_it 2.68 r_sphericity_bonded 2.588 r_scbond_it 1.956 r_rigid_bond_restr 1.307 r_angle_refined_deg 1.288 r_mcangle_it 1.238 r_mcbond_it 0.904 r_nbtor_refined 0.309 r_symmetry_vdw_refined 0.216 r_nbd_refined 0.192 r_symmetry_hbond_refined 0.138 r_xyhbond_nbd_refined 0.133 r_chiral_restr 0.088 r_bond_refined_d 0.01 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7680 Nucleic Acid Atoms Solvent Atoms 1098 Heterogen Atoms 54
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling AMoRE phasing