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Crystal Structure of TEP1r
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 294 2 M NaH2/K2H PO4, 0.2 M NaCl, 0.1 M imidazole pH 8.0, 50 mM NaK tartrate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 4.26 71.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 150.515 α = 90 b = 150.515 β = 90 c = 226.315 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD APS-1 SAGITALLY FOCUSING. 2ND CRYSTAL, ROSENBAUM-ROCK VERTICAL FOCUSING MIRROR 2006-11-11 M SINGLE WAVELENGTH 2 1 3 1 4 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.9791 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.698 50 99.9 0.08 10.1 7.8 72031 71959 -1 -1 69.24
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.698 2.75 99.9 0.898 2.1 7.5 3537
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIRAS THROUGHOUT 2.698 45.88 71859 71859 3631 100 0.239 0.2404 0.275 0.2691 RANDOM 52.085
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.23 1.23 -2.47
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.85 r_dihedral_angle_4_deg 19.75 r_dihedral_angle_3_deg 18.161 r_dihedral_angle_1_deg 5.962 r_scangle_it 2.159 r_scbond_it 1.217 r_angle_refined_deg 1.188 r_mcangle_it 0.958 r_mcbond_it 0.503 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.85 r_dihedral_angle_4_deg 19.75 r_dihedral_angle_3_deg 18.161 r_dihedral_angle_1_deg 5.962 r_scangle_it 2.159 r_scbond_it 1.217 r_angle_refined_deg 1.188 r_mcangle_it 0.958 r_mcbond_it 0.503 r_nbtor_refined 0.309 r_nbd_refined 0.209 r_symmetry_vdw_refined 0.191 r_symmetry_hbond_refined 0.142 r_xyhbond_nbd_refined 0.125 r_chiral_restr 0.083 r_bond_refined_d 0.009 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10270 Nucleic Acid Atoms Solvent Atoms 140 Heterogen Atoms 73
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MLPHARE phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling