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EF-hand domain of human RASEF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 5 291 0.6M Ammonium sulfate, 0.1M Sodium cacodylate, 0.01M Magnesium chloride, pH 5.0, VAPOR DIFFUSION, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.31 46.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.259 α = 90 b = 61.259 β = 90 c = 101.598 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS 2007-01-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E+ DW 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 30 100 0.137 8 14.9 18809
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.2 2.28 100 14.5
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD 2.3 30 9095 494 99.89 0.23 0.2286 0.2404 0.2634 0.2642 Thin shells 28.406
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.354 0.354 -0.708
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.005 r_dihedral_angle_4_deg 16.111 r_dihedral_angle_3_deg 12.226 r_dihedral_angle_1_deg 4.861 r_angle_other_deg 4.306 r_scangle_it 3.757 r_mcangle_it 3.685 r_scbond_it 2.542 r_mcbond_it 2.377 r_angle_refined_deg 1.235
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.005 r_dihedral_angle_4_deg 16.111 r_dihedral_angle_3_deg 12.226 r_dihedral_angle_1_deg 4.861 r_angle_other_deg 4.306 r_scangle_it 3.757 r_mcangle_it 3.685 r_scbond_it 2.542 r_mcbond_it 2.377 r_angle_refined_deg 1.235 r_symmetry_vdw_other 0.356 r_nbd_refined 0.313 r_metal_ion_refined 0.29 r_symmetry_vdw_refined 0.242 r_nbd_other 0.223 r_nbtor_refined 0.17 r_xyhbond_nbd_refined 0.159 r_symmetry_hbond_refined 0.126 r_nbtor_other 0.1 r_chiral_restr 0.071 r_bond_refined_d 0.013 r_gen_planes_other 0.008 r_gen_planes_refined 0.005 r_bond_other_d r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1104 Nucleic Acid Atoms Solvent Atoms 15 Heterogen Atoms 13
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SOLVE phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction