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Crystal structure of putative Mg2+ and Co2+ transporter(CorC)associated region from Neisseria meningitidis MC58
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 291 0.2M Zinc acetate, 0.1M Imidazole, 10% PEG 8000, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.91 57.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.718 α = 90 b = 67.991 β = 90 c = 129.044 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2007-03-19 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD SBC-3 2007-04-01 M SINGLE WAVELENGTH 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97940 APS 19-ID 2 SYNCHROTRON APS BEAMLINE 19-BM 1.28200 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.7 30 99.7 0.075 25.1 5.8 52593 52593
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.7 1.73 99.5 0.36 2.83 4.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.7 30 52593 49805 2677 99.59 0.1798 0.17854 0.17663 0.1903 0.21539 0.2287 RANDOM 10.282
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.37 0.24 0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.552 r_dihedral_angle_4_deg 19.932 r_dihedral_angle_3_deg 13.186 r_dihedral_angle_1_deg 6.023 r_scangle_it 4.355 r_scbond_it 3.092 r_mcangle_it 1.598 r_angle_refined_deg 1.558 r_mcbond_it 1.277 r_angle_other_deg 0.932
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.552 r_dihedral_angle_4_deg 19.932 r_dihedral_angle_3_deg 13.186 r_dihedral_angle_1_deg 6.023 r_scangle_it 4.355 r_scbond_it 3.092 r_mcangle_it 1.598 r_angle_refined_deg 1.558 r_mcbond_it 1.277 r_angle_other_deg 0.932 r_symmetry_vdw_other 0.475 r_symmetry_vdw_refined 0.378 r_symmetry_metal_ion_refined 0.348 r_mcbond_other 0.272 r_symmetry_hbond_refined 0.265 r_nbd_refined 0.227 r_metal_ion_refined 0.225 r_nbd_other 0.201 r_xyhbond_nbd_refined 0.182 r_nbtor_refined 0.173 r_chiral_restr 0.093 r_nbtor_other 0.087 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2569 Nucleic Acid Atoms Solvent Atoms 455 Heterogen Atoms 49
Software Software Software Name Purpose REFMAC refinement ADSC data collection HKL-3000 data reduction HKL-3000 data scaling SHELXD phasing SHELXE model building MLPHARE phasing DM phasing SOLVE phasing RESOLVE phasing ARP/wARP model building CCP4 phasing O model building Coot model building